Karthik Ram @_inundata

Yay Area / ✈ in transit

January 2013

ctitusbrown 2013 MSU summer course on Analyzing Next Generation Sequencing Data is now accepting applications: bioinformatics.msu.edu/ngs-summer-cou…

via Twitter Web Client (retweeted on 8:04 PM, Jan 31st, 2013 via Tweetbot for Mac)

mrgunn OH: “Scientists are really bad at life/work balance, because their life is their work.”

via TweetDeck (retweeted on 6:47 PM, Jan 31st, 2013 via Tweetbot for Mac)

GrunerDaniel unreal photo of wasp parasitoid larvae inside Cereal leaf beetle, on greenblueglobe blog shar.es/C89p7

via Twitter for Websites (retweeted on 11:35 AM, Jan 31st, 2013 via Tweetbot for Mac)

@yoavram check this out: bit.ly/VwH2yo

hopefully we can merge versioning from here if license permits.

via Tweetbot for Mac

@CMastication We’ve had this conv before!
him: It doesn’t work.
me: what? what? give me a reproducible example kid.

via Tweetbot for Mac in reply to CMastication

@distribecology Hey Ted your twitter account got hacked.

via Tweetbot for Mac in reply to emhrt_

@Thescienceofant First thought: tongue depressors are an odd swag item. Then realized those are pens. @figshare

via Tweetbot for Mac in reply to Thescienceofant

@CMastication I’m teaching my 12 yr old nephew. He catches on fast.

via Tweetbot for Mac in reply to CMastication

carlystrasser MT @JacquelynGill: = way to reward oppenness and change the culture of closed science.

via TweetDeck (retweeted on 8:58 AM, Jan 31st, 2013 via Tweetbot for Mac)

@ficaryl Thank you. It was really really ‘heartbreaking’.

via Tweetbot for Mac in reply to ficaryl

TomChivers Amazing picture of someone feeding birds in Krakow. Seriously, so much better than that sounds i.imgur.com/MmWl5y6.jpg

via Twitter Web Client (retweeted on 11:25 PM, Jan 30th, 2013 via Twitter Web Client)

al3x You are not ready for these baby tapir photos. You won’t be able to deal. Don’t say I didn’t warn you. imgur.com/a/lbxa6 (via @pjdoland)

via Tweetbot for Mac (retweeted on 11:24 PM, Jan 30th, 2013 via Twitter Web Client)

@ficaryl oh that’s a sad story. She um … ok. nevermind ;)

via Tweetbot for Mac in reply to ficaryl

@Drew_Lab @figshare hear hear! I don’t either. Mark is good people.

via Tweetbot for Mac in reply to Drew_Lab

@ficaryl So glad I’m not on FB. *shudder*

via Tweetbot for Mac in reply to ficaryl

@kj_gilbert Someday when we meet I should tell you my botfly story.

via Tweetbot for Mac in reply to kj_gilbert

. @eperlste @ctitusbrown This is how I plan to spend my startup funds once I get that job.

bit.ly/XlWAEw

via Tweetbot for Mac in reply to eperlste

@recology_ Because they charge watch parties $100 to cover streaming costs. Bummer a sf one never came through.

via Tweetbot for Mac in reply to sckottie

doc_becca Inspired by ? “@WorstProfEver: Adam Mansbach writes the most realistic fake class syllabus ever trib.al/UCX4GJN

via Twitter for iPhone (retweeted on 5:56 PM, Jan 30th, 2013 via Twitter Web Client)

@researchremix @LizNeeley is all kinds of awesome! Everyone should meet her IRL.

via Tweetbot for Mac in reply to researchremix

@kara_woo What is lake Baikal’s favorite pizza topping?

via Tweetbot for Mac in reply to kara_woo

@Drew_Lab Thanks man, I appreciate the support.

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@ctitusbrown Fantastic post re moz web making. My thoughts on this are quite similar and I’m glad to see a push to making these reality.

via Tweetbot for Mac

↬ to @mbeisen for previous tweet.

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Success w/o glamour pubs. Nice post using @jasonpriem’s methods and Entrez to figure out that only 5.7% of bioinfo pdocs have glamour pubs.

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Up until today I enjoyed the game of tracking down supplemental info through a maze of links. Now @figshare ruined all the fun. Thx a lot.

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PLOSONE Take a break to increase productivity: If willpower is a resource, taking a break may help replenish it ow.ly/hhdLa

via Hootsuite (retweeted on 2:37 PM, Jan 30th, 2013 via Tweetbot for Mac)

If anyone wants to collaborate on a browser based markdown editor for sci, get in touch with me or @yoavram
repo: bit.ly/10PuFTM

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Check out this new version of markx! Looks spiffy, eh?
i.imgur.com/FE7vgAs.png

source: bit.ly/10PuFTM cc @yoavram

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sandramchung Learning to use R to handle data is like learning to file a FOIA request - suddenly filled with sensation of ridiculous power

via Twitter for iPhone (retweeted on 1:15 PM, Jan 30th, 2013 via Tweetbot for Mac)

cboettig Interview discussing my open lab notebook appears in Nature’s Turning Pt column this week: goo.gl/NMo8w  

via ManageFlitter (retweeted on 1:09 PM, Jan 30th, 2013 via Tweetbot for Mac)

Fantastic! MT @kaythaney: We need more of this. @figshare and @PLOS team up to provide better access to data bit.ly/WyhlP4

via Tweetbot for Mac

More job applications this am. Doing my best to avoid being sent to the glue factory.

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@kj_gilbert post a reproducible example somewhere like gist.

via Tweetbot for iOS in reply to kj_gilbert

@punkish no wonder you weren’t at the open data meetup!

via Tweetbot for iOS in reply to punkish

@_inundata @tmccormick @CameronNeylon on Bart now and might not make it exactly at 5. If you two just pick a spot I’ll meet u there.

via Tweetbot for iOS in reply to _inundata

@kara_woo Tried it during my grad school days and it was a because my desk ht was not adjustable.

via Tweetbot for Mac in reply to kara_woo

@JacquelynGill That’s exactly what bump does for ios. Don’t know if its available for other platforms.

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@GrunerDaniel With the current momentum going in the movement, those societies are unlikely to survive.

via Tweetbot for Mac in reply to GrunerDaniel

@GrunerDaniel So is the ESA. Also non-commercial but paywalled. have you seen this? bit.ly/VulIgj

via Tweetbot for Mac in reply to GrunerDaniel

@tmccormick that’s usually true. But Lisa (the org) said bldg security needs names to allow folks in. Should I add you @CameronNeylon?

via Tweetbot for Mac in reply to tmccormick

@CameronNeylon @tmccormick Did either of you rsvp to the event? I have but can email the org with your names if you haven’t.

via Tweetbot for Mac in reply to CameronNeylon

@jebyrnes I guessed it was Jackie (second Peter) even before I clicked.

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@nmatasci On my twitter stream you are! All your projects sound exciting!

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@sjGoring got it, just making sure other smart people are as clumsy as I am.

via Tweetbot for Mac in reply to sjGoring

@sjGoring you just followed me again?

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@eperstle Nice job with the interview!

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@sjGoring Woke up this am and said no twitter. Straight to writing. two conf calls and coffee and I’m still here in my pjs.

via Tweetbot for Mac in reply to sjGoring

@sjGoring Since I’m a font nerd, I’ll push for Source code pro (free) via Adobe. See bit.ly/YfxJDi

via Tweetbot for Mac in reply to sjGoring

“It is an amazing time to do science, but an incredibly difficult time to be a scientist.” All of my angst. bit.ly/WdxNVU@mbeisen

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@geospacedman @sjGoring The current R logo might as well be made in comic sans. So hideous.

via Tweetbot for Mac in reply to geospacedman

@mrgunn Post that advice on a blog somewhere. More of us could benefit from it.

via Tweetbot for Mac in reply to mrgunn

@IanMulvany It is. except it breaks all backward compatibility which will suck for a while.

via Tweetbot for Mac in reply to IanMulvany

@labroides totally ok. But give then an out if they can’t do it for some reason.

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People who think they can multi-task suck at multi-tasking. @PLOS bit.ly/XHjUL6

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@arbesman I fall in that trap too so we just made one for eco types. bit.ly/W0GJxu (haven’t officially launched but should be fun).

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Everyone has big data problems these days.

youtube.com/watch?v=T_3WQY…

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@CameronNeylon @tmccormick @mrgunn Correct link. I don’t *have* to attend. Happy to just meet.

via Tweetbot for Mac in reply to CameronNeylon

MiriamGoldste Wowzers, my blogging retirement made @BoingBoing. Thanks @xeni! Still happy to field marine bio q’s via email. bit.ly/117twGn

via TweetDeck (retweeted on 5:19 PM, Jan 28th, 2013 via Tweetbot for Mac)

@CameronNeylon @tmccormick My evenings are open so no constraint on day. Maybe tom eve since there is a open data meetup by @mrgunn in sf?

via Tweetbot for Mac in reply to CameronNeylon

Last call “@rOpenSci: Get your entry in to our challenge bit.ly/14pAFBU due on 31 Jan”

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@msanclem @MiriamGoldste @Dr_Bik me too. Hopefully I will watch live and act all snooty. “I knew Miriam before she was this famous”.

via Tweetbot for iOS in reply to msanclem

@jess_carilli If you submit the *perfect* proposal, you *may* get funded. There is no room for even the tiniest mistake. walk the tightrope.

via Tweetbot for Mac in reply to jess_carilli

se_hampton Captivated by this article on using LIDAR to study bat roosting behavior..nature.com/srep/2012/1207…na Bats even look cute in relief

via TweetDeck (retweeted on 3:50 PM, Jan 28th, 2013 via Tweetbot for Mac)

@recology_ and phylopic came to mind when I wrote that answer. In that example I downloaded images first. Could come from a fn call instead.

via Tweetbot for Mac in reply to sckottie

@recology_ API docs are ready but api is not so can’t do much. And I only have this as my use case: bit.ly/T1s5ps

via Tweetbot for Mac in reply to sckottie

@recology_ Not yet. Still yours if you want it. I just began exploring it before the holidays.

via Tweetbot for Mac in reply to sckottie

@recology_ API is coming online soon. I have an early draft somewhere.

via Tweetbot for Mac in reply to sckottie

wilbanks @victoriastodden pffft. you can prove anything with data that supports a hypothesis. gimme some CONJECTURE.

via TweetDeck (retweeted on 12:10 PM, Jan 28th, 2013 via Tweetbot for Mac)

@MiriamGoldste wow, just read all the posts on dsn. Good luck Miriam! Don’t be a stranger.

via Tweetbot for Mac

sckottie Follow for hackathon news for the next week - great example of doing science in the open - code at github github.com/phylotastic

via Tweetbot for iOS (retweeted on 10:25 PM, Jan 27th, 2013 via Tweetbot for Mac)

eebtools Want to learn more about the kinds of tools that EEB folks use? Check out eebtools (bit.ly/W0GJxu).

via Tweetbot for Mac (retweeted on 8:51 PM, Jan 27th, 2013 via Tweetbot for Mac)

@jasonpriem But glad you’re power supply works. Been there before so I know the sinking feeling.

via Tweetbot for Mac in reply to jasonpriem

@jasonpriem Saw thumbnail before tweet. First thought: My god that’s a huge proposal. Stamped with sealing wax too! official!

via Tweetbot for Mac in reply to jasonpriem

victoriastodden Some (future) help if you’d like to share your confidential research data: privacytools.seas.harvard.edu and they are hiring too!

via Twitter Web Client (retweeted on 6:46 PM, Jan 27th, 2013 via Tweetbot for Mac)

arlinpeebles Sorry guys, I better call it a night. I have to be on the Internet first thing in the morning.

via Twitter for iPhone (retweeted on 6:41 PM, Jan 27th, 2013 via Twitter Web Client)

@distribecology I enjoyed it! Ira Glass guilted me into getting it to Berkeley early on.

via Tweetbot for iOS in reply to emhrt_

@elikint favorite tweet with link then save URL as PDF and save it to Dropbox folder named twitter favorites. Etc.

via Tweetbot for iOS in reply to elikint

@elikint browse the recipes. Automates most things in my life. If >70% chance of rain tomorrow leave rain jacket by keys tonight (text).

via Tweetbot for iOS in reply to elikint

@CjBayesian Just to play devils advocate. They aren’t all *that* bad.

via Tweetbot for iOS

@distribecology if you look closely (bottom right), it says Ted Hart was here.

via Tweetbot for iOS in reply to emhrt_

@recology_ @ramnath_vaidya @rstudioapp smart server-side caching, smoother transitions, native support for json -> d3.

via Tweetbot for iOS in reply to sckottie

@recology_ @ramnath_vaidya @rstudioapp Love Shiny but can’t wait for it to grow up and be in college already.

via Tweetbot for iOS in reply to sckottie

Hey scientists using Scribd to host pre-prints. Worst idea ever. nightmarish pay wall. Can’t print, can’t save. Tip: link directly to PDF.

via Tweetbot for iOS

@caseybergman @rmounce indeed. science would be rather quiet and slow for otherwise. Especially for someone like me that works alone.

via Tweetbot for iOS in reply to caseybergman

@recology_ awesome! congrats and have fun. Planning to build anything for ropensci while there?

via Tweetbot for Mac in reply to sckottie

srsupp If you do “unifying ecology across scales” and you are a grad student or postdoc, talk to me. I’m co-chairing a research conf!

via Twitter for iPad (retweeted on 10:36 PM, Jan 26th, 2013 via Tweetbot for Mac)

@shademar @mbeisen I feel the same way and it eats into my soul every day.

via Tweetbot for Mac in reply to shademar

@vijay_ivaturi That sounds way better. We don’t even get official time off.

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mbeisen thing that kills me most about F’d up funding situation is that there are so many amazing young scientists out there we are letting down

via Twitter Web Client (retweeted on 9:23 PM, Jan 26th, 2013 via Tweetbot for iOS)

mbeisen .@eperlste @KMBTweets @KateClancy @Mammals_Suck academia broken, but i will fiercely defend value of publicly-funded science

via Twitter Web Client (retweeted on 9:23 PM, Jan 26th, 2013 via Tweetbot for iOS)

yoyoha We never play good cop, bad cop with our kids. It’s more like annoyed cop, tired cop.

via Twitter for iPhone (retweeted on 6:10 PM, Jan 26th, 2013 via Tweetbot for iOS)

@rOpenSci @Impactstory @altmetric @researchremix Not new! They’ve been around since package inception :)

via Tweetbot for Mac in reply to rOpenSci

@Dr_Kalmia @labroides I definitely need a sugar mama. Let me know if good candidates come across your radar.

via Tweetbot for Mac in reply to Dr_Kalmia

Just got my w2 for 2012. Gross income might as well say “1 bag of jumbo peanuts”. How other postdocs have kids is one big mystery to me.

via Tweetbot for iOS

@recology_ /sad face. @eebtools may still have more new stuff for you. stay tuned.

via Tweetbot for Mac in reply to sckottie

@recology_ did you also find out about @IFTTT from eebtools?

via Tweetbot for Mac in reply to sckottie

@yoavram @tpoi also mundane stuff. I don’t check the weather. But if there is >70% chance of rain on wday, I get text at 7am jacket reminder

via Tweetbot for Mac in reply to yoavram

@yoavram @tpoi IF @recology_ tweets with the tag with a link THEN convert link to pdf and save in my Dropbox. stuff like that.

via Tweetbot for Mac in reply to yoavram

@ethanwhite All sounds promising but will have to wait till we see when the first ones come out.

via Tweetbot for Mac in reply to ethanwhite

@peromhc Take our IB search for e.g. Briefly considered applying. But look at the short list. Pieter?? bit.ly/VCwe1A

via Tweetbot for Mac in reply to macmanes

@carlystrasser wait, I don’t remember tweeting that. I know I’m losing my mind but

via Tweetbot for Mac in reply to carlystrasser

@peromhc @pedrobeltrao I’m eeb too and do a lot of ‘slow’ science. Makes it hard to get past initial cull with 100+ apps.

via Tweetbot for Mac in reply to macmanes

@pedrobeltrao @peromhc which feeds my impostor synd. even more. 12 pubs? meh, wait till I have at least 10 more.

via Tweetbot for Mac in reply to pedrobeltrao

@peromhc @rxnm_ @eperlste 1 short list/8 (still don’t feel competitive enough to apply in this climate). waiting on more accepted pubs

via Tweetbot for Mac in reply to macmanes

@msanclem awesome. He just needs a monocle and a hat.

via Tweetbot for Mac in reply to msanclem

@ctitusbrown absolutely nothing wrong with the guide. Just making fun of the dated term netiquette. flash back to mid 90s.

via Tweetbot for Mac in reply to ctitusbrown

Looks like honey badger Randall may have some competition. youtube.com/watch?v=6Jz0Jc…

via Tweetbot for Mac

@bioSimonUoB @Protohedgehog and things in the UK move faster too. For us the norm is 5-6 years.

via Tweetbot for Mac in reply to bioSimonB

@bioSimonUoB @Protohedgehog Understand. UK is different. We were encourage to pub first and not write a long diss then cut that down for pub

via Tweetbot for Mac in reply to bioSimonB

@Protohedgehog @bioSimonUoB Just publish cos you need to do it anyway. My diss was just papers stapled together. Less work for the committee

via Tweetbot for Mac in reply to Protohedgehog

kaythaney Also, tools/projects listed that you should follow: @figshare @swcarpentry @rOpenSci @1DegreeBio @Labguru @youngrewired radar.oreilly.com/2013/01/kaitli…

via Twitter for iPhone (retweeted on 9:31 AM, Jan 26th, 2013 via Tweetbot for iOS)

@bearloga No. I do that locally once and save the credentials in a .rda file. Works until I revoke the keys (which I rarely do).

via Tweetbot for Mac in reply to bearloga

@thrawny yes. nobody uses sourceforge anymore. ghost town. Less likely to attract contributions.

via Tweetbot for Mac in reply to j_colomb

@bearloga I’ve been using it since my dumb phone days. Back then DMs came as texts. I’d go for long runs and see sim updates ;)

via Tweetbot for Mac in reply to bearloga

@tpoi if you tell me that it was from my eebtools blurb, then I think the site has already worked! ;)

via Tweetbot for Mac in reply to tpoi

@bearloga or use twitteR and send yourself a DM at any point mid-way.

via Tweetbot for Mac in reply to bearloga

cjlortie Love your feedback on what to improve upon in the current peer-review system for an nceas working group: bit.ly/eebpublishing

via Twitter Web Client (retweeted on 3:28 PM, Jan 25th, 2013 via Tweetbot for Mac)

@msanclem Yeah, you can control any application on my mac. So it goes beyond gdoc (which is good for that single purpose).

via Tweetbot for Mac in reply to msanclem

@msanclem @SarahBisbing I prefer etherpad over gdocs for real time writing, and use @github for the rest.

via Tweetbot for Mac in reply to msanclem

@msanclem @SarahBisbing This is better because we can run the code, work with any app.

via Tweetbot for Mac in reply to msanclem

Just tried it with a collaborator. We were troubleshooting the same piece of code in real time. No more “go to line 14”.

via Tweetbot for Mac

WOW! Powwow is absolutely fantastic for collaborative screen sharing between macs. 2 cursors and both can type. bit.ly/10LxIXy

via Tweetbot for Mac

@tpoi I can’t live without it. Far too many recipes run my life.

via Tweetbot for Mac in reply to tpoi

wilbanks The point of open access is to convert scholarly knowledge into a true public good. Not just to remove its cost through technology.

via TweetDeck (retweeted on 2:08 PM, Jan 25th, 2013 via Tweetbot for Mac)

@labroides Actually that’s a brilliant idea never to ever get mentioned. Just use it to read and favorite.

via Tweetbot for Mac in reply to labroides

@labroides @kara_woo @StacyRHespanha Hi Stacy! Nice to see you here. Sorry I’m picking on you. :)

via Tweetbot for Mac in reply to labroides

@srsupp @recology_ ok, just looked through some old code. Looks like I stored everything in mason jars. Some had labels.

via Tweetbot for Mac in reply to srsupp

@KirkwoodLab @sandramchung I’m on bit.ly/Wru5nR too. But the site looks rather uninspiring, like a sad wordpress page. Never use it.

via Tweetbot for Mac in reply to KirkwoodLab

@srsupp @recology_ For me every “major” “version” was a zip file with a date and folder name.

via Tweetbot for Mac in reply to srsupp

@KirkwoodLab @sandramchung I don’t know what ResearchGate is but is sounds like the mother of all science conspiracies.

via Tweetbot for Mac in reply to KirkwoodLab

@srsupp @ethanwhite Fax me your latest commits. I will diff them with my xerox machine.

via Tweetbot for Mac in reply to srsupp

Seeing ‘big data’ in a tweet is like walking into a store playing Gotye loudly over the speakers.

via Tweetbot for Mac

@ctitusbrown I can’t complain because I also have Twitter open.

via Tweetbot for Mac in reply to ctitusbrown

@revodavid the top voted comment is how can we move these folks elsewhere, we just need their main attractions ;)

via Tweetbot for Mac in reply to revodavid

@jasonpriem quickly registers domain. ImpactStory: We write impactful college essays for your ivy league application. starting at $99.

via Tweetbot for Mac in reply to jasonpriem

@recology_ you’re not crazy. did it disappear? I haven’t used it in a while.

via Tweetbot for Mac in reply to sckottie

Hey eco evo folks, final week to get in on the @rOpenSci offer.

bit.ly/W3lB9U

via Tweetbot for Mac

Cmdr_Hadfield The Golden Gate Bridge from space, and if you look closely, its shadow. pic.twitter.com/lz4HEoMb

via Twitter Web Client (retweeted on 2:10 PM, Jan 24th, 2013 via Twitter Web Client)

@GrunerDaniel indeed. Nice to see you more on Twitter though. Sorry didn’t get to catch up at esa.

via Tweetbot for Mac in reply to GrunerDaniel

I really want to watch the new BBC Africa series. Anywhere online I can stream it?

via Tweetbot for Mac

Very thoughtful post by @MiriamGoldste on privilege in marine sci (but applies more broadly). I relate to this.
bit.ly/10EdfEb

via Tweetbot for Mac

@GrunerDaniel You need to start a blog, Dan. The Gruner log. or something. I’d totally read it.

via Tweetbot for Mac in reply to GrunerDaniel

@jebyrnes Nice. Can you differentiate tweets from ecolog? Is that bit ly link tied to someone’s account?

via Tweetbot for Mac in reply to jebyrnes

@drnickisaac Please post a new tweet when that permanent position is announced.

via Tweetbot for Mac in reply to drnickisaac

All the conference spam I get has pegged me as an in-demand algae expert in China. Other ecologists get the same or diff kinds?

via Tweetbot for Mac

blogging tips: Write post. Tell everyone who disagrees that they misunderstood. Update post as req. Add emoticons to diff awkwardness.

via Tweetbot for Mac

Tim @tpoi weighs in on the where to submit your paper discussion. bit.ly/14ed1Hu mostly agree.

via Tweetbot for Mac

@sjGoring @JacquelynGill Right. Just desc. the article. I subscribe to this point though.

via Tweetbot for Mac in reply to sjGoring

Go read this fantastic response by @BoraZ about where to submit your paper.

bit.ly/WwNULv

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statsy people, if there is no code there is no paper. I simply don’t know what you did.

bit.ly/WwMnVH

via Tweetbot for Mac

@tpoi @rmounce @JacquelynGill @hylopsar @tomezard @DavidJohnGibson Also room for more articles! ping me if you want to write another one.

via Tweetbot for Mac in reply to tpoi

@rmounce love it too but impact factor?? Doesn’t help folks on the job market.

via Tweetbot for iOS in reply to rmounce

@TheAtavism anyway, the point is don’t lose hope. Things work out. Keep looking.

via Tweetbot for Mac in reply to TheAtavism

@TheAtavism Was complaining the night before. And the next afternoon again because I had too many to choose from. Luck is weird sometimes.

via Tweetbot for Mac in reply to TheAtavism

@TheAtavism Keep your chin up. First time around nothing worked out and then one fine morning I was offered 3 postdocs in the same morning.

via Tweetbot for Mac in reply to TheAtavism

jasonpriem BREAKING: Mendeley Nixes Elsevier Sale; Cites Plaintive Help Ticket As Reason: feedback.mendeley.com/forums/4941-ge…

via TweetDeck (retweeted on 9:35 PM, Jan 23rd, 2013 via Tweetbot for iOS)

@jasonpriem I just snorted my drink. Well played, sir.

via Tweetbot for iOS in reply to jasonpriem

mbeisen what is this journal “Preparation” that everyone’s most interesting new work seems to be in?

via Twitter Web Client (retweeted on 8:44 PM, Jan 23rd, 2013 via Tweetbot for Mac)

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